Dr Laurent Frantz

Ancient mitogenomes from Pre-Pottery Neolithic Central Anatolia and the effects of a Late Neolithic bottleneck in sheep (Ovis aries)
Sandoval-Castellanos E, Hare AJ, Lin AT, Dimopoulos EA, Daly KG, Geiger S, Mullin VE, Wiechmann I, Mattiangeli V, Lühken G, Zinovieva NA, Zidarov P, Çakırlar C, Stoddart S, Orton D, Bulatović J, Mashkour M, Sauer EW, Horwitz LK, Horejs B, et al.
Science Advances, American Association For The Advancement of Science (Aaas) vol. 10 (15) 
12-04-2024

Patagonian partnerships: the extinct Dusicyon avus and its interaction with prehistoric human communities
Abbona CC, Lebrasseur O, Prevosti FJ, Peralta E, Venanzi LG, Frantz L, Larson G, Gil AF and Neme GA
Royal Society Open Science, The Royal Society vol. 11 (4) 
01-04-2024

Genomic insights into the population history and adaptive traits of Latin American Criollo cattle
Ward JA, Ng'ang'a SI, Randhawa IAS, McHugo GP, O'Grady JF, Flórez JM, Browne JA, O’Brien AMP, Landaeta-Hernández AJ, Garcia JF, Sonstegard TS, Frantz LAF, Salter-Townshend M and MacHugh DE
Royal Society Open Science, The Royal Society vol. 11 (3) 
01-03-2024

A compendium of genetic regulatory effects across pig tissues
Teng J, Gao Y, Yin H, Bai Z, Liu S, Zeng H, Bai L, Cai Z, Zhao B, Li X, Xu Z, Lin Q, Pan Z, Yang W, Yu X, Guan D, Hou Y, Keel BN, Rohrer GA, Lindholm-Perry AK, et al.
Nature Genetics, Springer Nature vol. 56 (1), 112-123.  
01-01-2024

Ancient chicken remains reveal the origins of virulence in Marek’s disease virus
Fiddaman SR, Dimopoulos EA, Lebrasseur O, du Plessis L, Vrancken B, Charlton S, Haruda AF, Tabbada K, Flammer PG, Dascalu S, Marković N, Li H, Franklin G, Symmons R, Baron H, Daróczi-Szabó L, Shaymuratova DN, Askeyev IV, Putelat O, Sana M, et al.
Science, American Association For The Advancement of Science (Aaas) vol. 382 (6676), 1276-1281.  
14-12-2023

The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge
Lin AT, Hammond-Kaarremaa L, Liu H-L, Stantis C, McKechnie I, Pavel M, Pavel SSM, Wyss SSÁ, Sparrow DQ, Carr K, Aninta SG, Perri A, Hartt J, Bergström A, Carmagnini A, Charlton S, Dalén L, Feuerborn TR, France CAM, Gopalakrishnan S, et al.
Science, American Association For The Advancement of Science (Aaas) vol. 382 (6676), 1303-1308.  
14-12-2023

A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice ES, Alberdi A, Alfieri J, Athrey G, Balacco JR, Bardou P, Blackmon H, Charles M, Cheng HH, Fedrigo O, Fiddaman SR, Formenti G, Frantz LAF, Gilbert MTP, Hearn CJ, Jarvis ED, Klopp C, Marcos S, Mason AS, Velez-Irizarry D, et al.
Bmc Biology, Springer Nature vol. 21 (1) 
22-11-2023

Author Correction: Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
Meadows JRS, Kidd JM, Wang G-D, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, Arumilli M, Hundi S, Lindblad-Toh K, Ginja C, Agustina KK, et al.
Genome Biology, Springer Nature vol. 24 (1) 
07-11-2023

ifCNV: A novel isolation-forest-based package to detect copy-number variations from various targeted NGS datasets
Cabello-Aguilar S, Vendrell JA, Van Goethem C, Brousse M, Gozé C, Frantz L and Solassol J
Molecular Therapy - Nucleic Acids, Cell Press vol. 30, 174-183.  
13-12-2022

Safeguarding Imperiled Biodiversity and Evolutionary Processes in the Wallacea Center of Endemism
Struebig MJ, Aninta SG, Beger M, Bani A, Barus H, Brace S, Davies ZG, De Brauwer M, Diele K, Djakiman C, Djamaluddin R, Drinkwater R, Dumbrell A, Evans D, Fusi M, Herrera-Alsina L, Iskandar DT, Jompa J, Juliandi B, Lancaster LT, et al.
Bioscience, Oxford University Press vol. 72 (11), 1118-1130.  
19-10-2022

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data
Dimopoulos EA, Carmagnini A, Velsko IM, Warinner C, Larson G, Frantz LAF and Irving-Pease EK
Plos Computational Biology, Public Library of Science, 2020.12.16.419085-2020.12.16.419085.  
30-09-2022

The genomic history and global expansion of domestic donkeys
Todd ET, Tonasso-Calvière L, Chauvey L, Schiavinato S, Fages A, Seguin-Orlando A, Clavel P, Khan N, Pardal LP, Rosa LP, Librado P, Ringbauer H, Verdugo M, Southon J, Aury JM, Perdereau A, Vila E, Marzullo M, Prato O, Tecchiati U, et al.
Science, American Association For The Advancement of Science vol. 377 (6611), 1172-1180.  
08-09-2022

Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear
Zou T, Kuang W, Yin T, Frantz L, Zhang C, Liu J, Wu H and Yu L
Proceedings of The National Academy of Sciences of The United States of America, Proceedings of The National Academy of Sciences vol. 119 (31) 
18-07-2022

Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations
Ward JA, McHugo GP, Dover MJ, Hall TJ, Ng'ang'a SI, Sonstegard TS, Bradley DG, Frantz LAF, Salter-Townshend M and MacHugh DE
Iscience, Cell Press vol. 25 (7) 
15-07-2022

Grey wolf genomic history reveals a dual ancestry of dogs
Bergström A, Stanton DWG, Taron UH, Frantz L, Sinding M-HS, Ersmark E, Pfrengle S, Cassatt-Johnstone M, Lebrasseur O, Girdland-Flink L, Fernandes DM, Ollivier M, Speidel L, Gopalakrishnan S, Westbury MV, Ramos-Madrigal J, Feuerborn TR, Reiter E, Gretzinger J, Münzel SC, et al.
Nature, Springer Nature vol. 607 (7918), 313-320.  
29-06-2022

The biocultural origins and dispersal of domestic chickens
Peters J, Lebrasseur O, Irving-Pease EK, Paxinos PD, Best J, Smallman R, Callou C, Gardeisen A, Trixl S, Frantz L, Sykes N, Fuller DQ and Larson G
Proceedings of The National Academy of Sciences, National Academy of Sciences vol. 119 (24) 
06-06-2022

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids
Plassais J, vonHoldt BM, Parker HG, Carmagnini A, Dubos N, Papa I, Bevant K, Derrien T, Hennelly LM, Whitaker DT, Harris AC, Hogan AN, Huson HJ, Zaibert VF, Linderholm A, Haile J, Fest T, Habib B, Sacks BN, Benecke N, et al.
Current Biology, Elsevier vol. 32 (4), 889-897.e9.  
28-02-2022

Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors
Fiddaman SR, Vinkler M, Spiro SG, Levy H, Emerling CA, Boyd AC, Dimopoulos EA, Vianna JA, Cole TL, Pan H, Fang M, Zhang G, Hart T, Frantz LAF and Smith AL
Molecular Biology and Evolution, Oxford University Press vol. 39 (1) 
13-12-2021

Population genomic, olfactory, dietary, and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs
Petrelli S, Buglione M, Maselli V, Troiano C, Larson G, Frantz L, Manin A, Ricca E, Baccigalupi L, Wright D, Pietri C and Fulgione D
Molecular Ecology, Wiley vol. 31 (1), 220-237.  
31-10-2021

Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Sinding M-HS, Ciucani MM, Ramos-Madrigal J, Carmagnini A, Rasmussen JA, Feng S, Chen G, Vieira FG, Mattiangeli V, Ganjoo RK, Larson G, Sicheritz-Pontén T, Petersen B, Frantz L, Gilbert MTP and Bradley DG
Iscience, Elsevier vol. 24 (11) 
06-10-2021

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal
Feuerborn TR, Carmagnini A, Losey RJ, Nomokonova T, Askeyev A, Askeyev I, Askeyev O, Antipina EE, Appelt M, Bachura OP, Beglane F, Bradley DG, Daly KG, Gopalakrishnan S, Murphy Gregersen K, Guo C, Gusev AV, Jones C, Kosintsev PA, Kuzmin YV, et al.
Proceedings of The National Academy of Sciences of The United States of America, Proceedings of The National Academy of Sciences vol. 118 (39) 
20-09-2021

Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote
Sacks BN, Mitchell KJ, Quinn CB, Hennelly LM, Sinding MS, Statham MJ, Preckler‐Quisquater S, Fain SR, Kistler L, Vanderzwan SL, Meachen JA, Ostrander EA and Frantz LAF
Molecular Ecology, Wiley vol. 30 (17), 4292-4304.  
07-07-2021

Capitalizing on the Potential of South African Indigenous Beef Cattle Breeds: A Review
Van Marle-Köster E, Visser C, Sealy J and Frantz L
Sustainability, Mdpi vol. 13 (8) 
15-04-2021

A Zooarchaeological and Molecular Assessment of Ancient Chicken Remains from Russia
Lebrasseur O, Department of Archaeology CAE, Shaymuratova DN, Askeyev AO, Asylgaraeva GS, Frantz L, Larson G, Askeyev OV, Askeyev IV, Wealth TAOSIOPIEAM, Khalikov TAOSIOANAAK, University of Munich LM, University of London M and School of Archaeology UOO
Поволжская Археология, Tatarstan Academy of Sciences vol. 1 (35), 216-231.  
25-03-2021

Dog domestication and the dual dispersal of people and dogs into the Americas
Perri AR, Feuerborn TR, Frantz LAF, Larson G, Malhi RS, Meltzer DJ and Witt KE
Proceedings of The National Academy of Sciences of The United States of America vol. 118 (6) 
09-02-2021

Dire wolves were the last of an ancient New World canid lineage
Perri AR, Mitchell KJ, Mouton A, Álvarez-Carretero S, Hulme-Beaman A, Haile J, Jamieson A, Meachen J, Lin AT, Schubert BW, Ameen C, Antipina EE, Bover P, Brace S, Carmagnini A, Carøe C, Samaniego Castruita JA, Chatters JC, Dobney K, dos Reis M, et al.
Nature, Springer Nature vol. 591 (7848), 87-91.  
13-01-2021

Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation
Zeng L, Liu H-Q, Tu X-L, Ji C-M, Gou X, Esmailizadeh A, Wang S, Wang M-S, Wang M-C, Li X-L, Charati H, Adeola AC, Adedokun RAM, Oladipo O, Olaogun SC, Sanke OJ, F. MG, Ommeh SC, Agwanda B, Lichoti JK, et al.
动物学研究, Zoological Research vol. 42 (4), 450-460.  
01-01-2021

Reconsidering domestication from a process archaeology perspective
Bogaard A, Allaby R, Arbuckle BS, Bendrey R, Crowley S, Cucchi T, Denham T, Frantz L, Fuller D, Gilbert T, Karlsson E, Manin A, Marshall F, Mueller N, Peters J, Stépanoff C, Weide A and Larson G
World Archaeology, Taylor & Francis vol. 53 (1), 56-77.  
01-01-2021

Genetic Diversity, Inbreeding Level, and Genetic Load in Endangered Snub-Nosed Monkeys (Rhinopithecus)
Kuang W, Hu J, Wu H, Fen X, Dai Q, Fu Q, Xiao W, Frantz L, Roos C, Nadler T, Irwin DM, Zhou L, Yang X and Yu L
Frontiers in Genetics, Frontiers vol. 11 
15-12-2020

Addendum: Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion
Liu L, Bosse M, Megens HJ, Frantz LAF, Lee YL, Irving-Pease EK, Narayan G, Groenen MAM and Madsen O
Nature Communications vol. 11 (1) 
01-12-2020

Genetic origins and diversity of bushpigs from Madagascar (Potamochoerus larvatus, family Suidae)
Lee C, Day J, Goodman SM, Pedrono M, Besnard G, Frantz L, Taylor PJ, Herrera MJ and Gongora J
Scientific Reports, Springer Nature vol. 10 (1) 
26-11-2020

Origins and genetic legacy of prehistoric dogs
Bergström A, Frantz L, Schmidt R, Ersmark E, Lebrasseur O, Girdland-Flink L, Lin AT, Storå J, Sjögren KG, Anthony D, Antipina E, Amiri S, Bar-Oz G, Bazaliiskii VI, Bulatović J, Brown D, Carmagnini A, Davy T, Fedorov S, Fiore I, et al.
Science (New York, N.Y.) vol. 370 (6516), 557-564.  
30-10-2020

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages
Ramos-Madrigal J, Sinding M-HS, Carøe C, Mak SST, Niemann J, Castruita JAS, Fedorov S, Kandyba A, Germonpré M, Bocherens H, Feuerborn TR, Pitulko VV, Pavlova EY, Nikolskiy PA, Kasparov AK, Ivanova VV, Larson G, Frantz LAF, Willerslev E, Meldgaard M, et al.
Current Biology, Elsevier vol. 31 (1), 198-206.e8.  
29-10-2020

863 genomes reveal the origin and domestication of chicken
Wang MS, Thakur M, Peng MS, Jiang Y, Frantz LAF, Li M, Zhang JJ, Wang S, Peters J, Otecko NO, Suwannapoom C, Guo X, Zheng ZQ, Esmailizadeh A, Hirimuthugoda NY, Ashari H, Suladari S, Zein MSA, Kusza S, Sohrabi S, et al.
Cell Research, Springer Nature [Academic Journals on Nature.Com] vol. 30 (8), 693-701.  
01-08-2020

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
Sinding MHS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, Nikolskiy PA, Kasparov AK, Ivanova VV, Willerslev E, Skoglund P, et al.
Science, Aaas vol. 368 (6498), 1495-1499.  
26-06-2020

A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids
Allen R, Ryan H, Davis BW, King C, Frantz L, Irving-Pease E, Barnett R, Linderholm A, Loog L, Haile J, Lebrasseur O, White M, Kitchener AC, Murphy WJ and Larson G
Proceedings of The Royal Society B: Biological Sciences, Royal Society, The vol. 287 (1928), 20200690-20200690.  
03-06-2020

Animal domestication in the era of ancient genomics
Frantz LAF, Bradley DG, Larson G and Orlando L
Nature Reviews Genetics, Nature Research (Part of Springer Nature) vol. 21 (8), 449-460.  
07-04-2020

Evidence of pathogen-induced immunogenetic selection across the large geographic range of a wild seabird.
Levy H, Fiddaman SR, Vianna JA, Noll D, Clucas GV, Sidhu JKH, Polito MJ, Bost CA, Phillips RA, Crofts S, Miller GD, Pistorius P, Bonnadonna F, Bohec CL, Barbosa AA, Trathan P, Rey AR, Frantz LAF, Hart T and Smith AL
Molecular Biology and Evolution, Oxford University Press (Oup) 
25-02-2020

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia
Loog L, Thalmann O, Sinding MHS, Schuenemann VJ, Perri A, Germonpré M, Bocherens H, Witt KE, Samaniego Castruita JA, Velasco MS, Lundstrøm IKC, Wales N, Sonet G, Frantz L, Schroeder H, Budd J, Jimenez EL, Fedorov S, Gasparyan B, Kandel AW, et al.
Molecular Ecology, Wiley vol. 29 (9), 1596-1610.  
02-01-2020

Genomic consequences of population decline in critically endangered pangolins and their demographic histories
Hu JY, Hao ZQ, Frantz L, Wu SF, Chen W, Jiang YF, Wu H, Kuang WM, Li H, Zhang YP and Yu L
National Science Review vol. 7 (4), 798-814.  
01-01-2020

Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic
Ameen C, Feuerborn TR, Brown SK, Linderholm A, Hulme-Beaman A, Lebrasseur O, Sinding MHS, Lounsberry ZT, Lin AT, Appelt M, Bachmann L, Betts M, Britton K, Darwent J, Dietz R, Fredholm M, Gopalakrishnan S, Goriunova OI, Grønnow B, Haile J, et al.
Proceedings of The Royal Society B: Biological Sciences, Royal Society, The vol. 286 (1916) 
27-11-2019

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe
Frantz LAF, Haile J, Lin AT, Scheu A, Geörg C, Benecke N, Alexander M, Linderholm A, Mullin VE, Daly KG, Battista VM, Price M, Gron KJ, Alexandri P, Arbogast RM, Arbuckle B, Bǎlǎşescu A, Barnett R, Bartosiewicz L, Baryshnikov G, et al.
Proceedings of The National Academy of Sciences of The United States of America, National Academy of Sciences vol. 116 (35), 17231-17238.  
27-08-2019

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage
Velsko IM, Fellows Yates JA, Aron F, Hagan RW, Frantz LAF, Loe L, Martinez JBR, Chaves E, Gosden C, Larson G and Warinner C
Microbiome, Springer Nature vol. 7 (1) 
06-07-2019

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion
Liu L, Bosse M, Megens H-J, Frantz LAF, Lee Y-L, Irving-Pease EK, Narayan G, Groenen MAM and Madsen O
Nature Communications, Springer Nature vol. 10 (1) 
30-04-2019

Dog10K: An international sequencing effort to advance studies of canine domestication, phenotypes and health
Ostrander EA, Wang GD, Larson G, Vonholdt BM, Davis BW, Jagannathan V, Hitte C, Wayne RK, Zhang YP, André C, Axelsson E, Boyko A, Forman O, Frantz L, Karlsson E, Kidd J, Leeb T, Lindblad-Toh K, Lohi H, Lohmueller KE, et al.
National Science Review, Oxford University Press (Oup) vol. 6 (4), 810-824.  
10-04-2019

The Origin and Population History of the Endangered Golden Snub-Nosed Monkey (Rhinopithecus roxellana)
Kuang WM, Ming C, Li HP, Wu H, Frantz L, Roos C, Zhang YP, Zhang CL, Jia T, Yang JY and Yu L
Molecular Biology and Evolution vol. 36 (3), 487-499.  
01-03-2019

Dogs accompanied humans during the Neolithic expansion into Europe
Ollivier M, Tresset A, Frantz LAF, Bréhard S, Bălăşescu A, Mashkour M, Boroneant A, Pionnier-Capitan M, Lebrasseur O, Arbogast RM, Bartosiewicz L, Debue K, Rabinovich R, Sablin MV, Larson G, Hänni C, Hitte C and Vigne JD
Biology Letters, Royal Society, The vol. 14 (10) 
17-10-2018

Paleogenomics of Animal Domestication
FRANTZ LAF
 
11-10-2018

ABLE: blockwise site frequency spectra for inferring complex population histories and recombination
Beeravolu CR, Hickerson MJ, Frantz LAF and Lohse K
Genome Biology, Springer Nature vol. 19 (1) 
25-09-2018

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research
Velsko IM, Frantz LAF, Herbig A, Larson G and Warinner C
Msystems, American Society For Microbiology vol. 3 (4), 10.1128/msystems.000-10.1128/msystems.000.  
17-07-2018

The Evolutionary History of Dogs in the Americas
FRANTZ LAF
Science 
06-07-2018

A genetic perspective on the domestication continuum
FRANTZ LAF and LARSON G
In Hybrid Communities: Biosocial Approaches to Domestication and Other Trans-Species Relationships, Taylor & Francis 
30-05-2018

Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events
Frantz LAF, Rudzinski A, Nugraha AMS, Evin A, Burton J, Hulme-Beaman A, Linderholm A, Barnett R, Vega R, Irving-Pease EK, Haile J, Allen R, Leus K, Shephard J, Hillyer M, Gillemot S, van den Hurk J, Ogle S, Atofanei C, Thomas MG, et al.
Proceedings of The Royal Society B, The Royal Society vol. 285 (1876) 
11-04-2018

Rabbits and the Specious Origins of Domestication.
Irving-Pease EK, Frantz LAF, Sykes N, Callou C and Larson G
Trends Ecol Evol vol. 33 (3), 149-152.  
14-02-2018

The dental calculus metabolome in modern and historic samples.
Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K, Lewis CM, Martinez JBR, Chaves E, Coon JJ, Larson G and Warinner C
Metabolomics vol. 13 (11), 134-134.  
03-10-2017

Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets
Prendergast ME, Buckley M, Crowther A, Frantz L, Eager H, Lebrasseur O, Hutterer R, Hulme-Beaman A, Van Neer W, Douka K, Veall M-A, Quintana Morales EM, Schuenemann VJ, Reiter E, Allen R, Dimopoulos EA, Helm RM, Shipton C, Mwebi O, Denys C, et al.
Plos One vol. 12 (8), e0182565-e0182565. Editors: Hoon Shin D. 
17-08-2017

Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs.
Adeola AC, Oluwole OO, Oladele BM, Olorungbounmi TO, Boladuro B, Olaogun SC, Nneji LM, Sanke OJ, Dawuda PM, Omitogun OG, Frantz L, Murphy RW, Xie H-B, Peng M-S and Zhang Y-P
Genet Sel Evol vol. 49 (1), 52-52.  
26-06-2017

A novel MC1R allele for black coat colour reveals the Polynesian ancestry and hybridization patterns of Hawaiian feral pigs
Linderholm A, Spencer D, Battista V, Frantz L, Barnett R, Fleischer RC, James HF, Duffy D, Sparks JP, Clements DR, Andersson L, Dobney K, Leonard JA and Larson G
Royal Society Open Science vol. 3 (9), 160304-160304.  
01-09-2016

Genomic and archaeological evidence suggest a dual origin of domestic dogs.
Frantz LAF, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, Nyerges ÉA, Sablin MV, Bréhard S, Mashkour M, Bălăşescu A, et al.
Science vol. 352 (6290), 1228-1231.  
03-06-2016

Artificial selection on introduced Asian haplotypes shaped the genetic architecture in European commercial pigs
Bosse M, Lopes MS, Madsen O, Megens H-J, Crooijmans RPMA, Frantz LAF, Harlizius B, Bastiaansen JWM and Groenen MAM
Proceedings of The Royal Society B, The Royal Society vol. 282 (1821) 
22-12-2015

The Evolution of Suidae
Frantz L, Meijaard E, Gongora J, Haile J, Groenen MAM and Larson G
Annual Review of Animal Biosciences, Annual Reviews vol. 4 (1), 1-25.  
02-11-2015

Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks
Bunnefeld L, Frantz LAF and Lohse K
Genetics, Oxford University Press (Oup) vol. 201 (3), 1157-1169.  
03-09-2015

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
Frantz LAF, Schraiber JG, Madsen O, Megens H-J, Cagan A, Bosse M, Paudel Y, Crooijmans RPMA, Larson G and Groenen MAM
Nature Genetics, Springer Nature vol. 47 (10), 1141-1148.  
31-08-2015

Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors
Paudel Y, Madsen O, Megens H-J, Frantz LAF, Bosse M, Crooijmans RPMA and Groenen MAM
Bmc Genomics, Springer Nature vol. 16 (1) 
22-04-2015

Evolution of Tibetan wild boars
Frantz LAF, Madsen O, Megens H-J, Schraiber JG, Paudel Y, Bosse M, Crooijmans RPMA, Larson G and Groenen MAM
Nature Genetics, Springer Nature vol. 47 (3), 188-189.  
25-02-2015

Hybrid origin of European commercial pigs examined by an in-depth haplotype analysis on chromosome 1
Bosse M, Madsen O, Megens H-J, Frantz LAF, Paudel Y, Crooijmans RPMA and Groenen MAM
Frontiers in Genetics, Frontiers vol. 5 
05-01-2015

Testing models of speciation from genome sequences: divergence and asymmetric admixture in Island South‐East Asian Sus species during the Plio‐Pleistocene climatic fluctuations
Frantz LAF, Madsen O, Megens H, Groenen MAM and Lohse K
Molecular Ecology, Wiley vol. 23 (22), 5566-5574.  
01-11-2014

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression
Bosse M, Megens H-J, Frantz LAF, Madsen O, Larson G, Paudel Y, Duijvesteijn N, Harlizius B, Hagemeijer Y, Crooijmans RPMA and Groenen MAM
Nature Communications, Springer Nature vol. 5 (1) 
15-07-2014

Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations
Bosse M, Megens H, Madsen O, Frantz LAF, Paudel Y, Crooijmans RPMA and Groenen MAM
Molecular Ecology, Wiley vol. 23 (16), 4089-4102.  
16-06-2014

The genetics of indirect ecological effects—plant parasites and aphid herbivores
Rowntree JK, Zytynska SE, Frantz L, Hurst B, Johnson A and Preziosi RF
Frontiers in Genetics, Frontiers vol. 5 
08-04-2014

Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes
Lohse K and Frantz LAF
Genetics, Oxford University Press (Oup) vol. 196 (4), 1241-1251.  
01-04-2014

Host‐plant genotypic diversity and community genetic interactions mediate aphid spatial distribution
Zytynska SE, Frantz L, Hurst B, Johnson A, Preziosi RF and Rowntree JK
Ecology and Evolution, Wiley vol. 4 (2), 121-131.  
15-12-2013

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
Frantz LA, Schraiber JG, Madsen O, Megens H-J, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G and Groenen MA
Genome Biology, Springer Nature vol. 14 (9) 
01-01-2013

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication
Paudel Y, Madsen O, Megens H-J, Frantz LA, Bosse M, Bastiaansen JW, Crooijmans RP and Groenen MA
Bmc Genomics, Springer Nature vol. 14 (1) 
01-01-2013

Pig Domestication and Human-Mediated Dispersal in Western Eurasia Revealed through Ancient DNA and Geometric Morphometrics
Ottoni C, Flink LG, Evin A, Geörg C, De Cupere B, Van Neer W, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Decorte R, Waelkens M, Vanderheyden N, Ricaut F-X, Çakırlar C, Çevik Ö, Hoelzel AR, Mashkour M, Karimlu AFM, Seno SS, et al.
Molecular Biology and Evolution, Oxford University Press (Oup) vol. 30 (4), 824-832.  
22-11-2012

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
Tortereau F, Servin B, Frantz L, Megens H-J, Milan D, Rohrer G, Wiedmann R, Beever J, Archibald AL, Schook LB and Groenen MA
Bmc Genomics, Springer Nature vol. 13 (1) 
15-11-2012

Analyses of pig genomes provide insight into porcine demography and evolution
Groenen MAM, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens H-J, Li S, Larkin DM, Kim H, Frantz LAF, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, et al.
Nature, Springer Nature vol. 491 (7424), 393-398.  
14-11-2012

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape
Bosse M, Megens H-J, Madsen O, Paudel Y, Frantz LAF, Schook LB, Crooijmans RPMA and Groenen MAM
Plos Genetics, Public Library of Science (Plos) vol. 8 (11) 
01-01-2012